Publications

*: Co-first, °: Co-corresponding

This page is no longer updated. You can find all my articles on my Google Scholar profile.

2024 (1)

(44) M. T. Strauss°, I. Bludau, W. Zeng, E. Voytik, C. Ammar, J. P. Schessner, I. Rajesh, M. Gill, F. Meier, S. Willems, M. Mann° AlphaPept: a modern and open framework for MS-based proteomics
Nature Communications (2024)

2023 (5)

(43) A. C. Michaelis, A-D. Brunner, M. Zwiebel, F. Meier, M. T. Strauss, I. Bludau, M. Mann° The social and structural architecture of the yeast protein interactome
Nature (2023).

(42) F. A. Rosenberger, M. Thielert, M. T. Strauss, L. Schweizer, C. Ammar, S. C. Mädler, A. Metousis, P. Skowronek, M. Wahle, K. Madden, J. Gote-Schniering, A. Semenova, H. B. Schiller, E. Rodriguez, T. M. Nordmann, A. Mund, M. Mann° Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome
Nature Methods (2023).

(41) E. Krismer, I. Bludau, M. T. Strauss°, M. Mann° AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics
Bioinformatics (2023).

(40) S. Lobentanzer°, P. Aloy, J. Baumbach, B. Bohar, V. J. Carey, P. Charoentong, K. Danhauser, T. Doğan, J. Dreo, I. Dunham, E. Farr, A. Fernandez-Torras, B. M. Gyori, M. Hartung, C. T. Hoyt, C. Klein, T. Korcsmaros, A. Maier, M. Mann, D. Ochoa, E. Pareja-Lorente, F. Popp, M. Preusse, N. Probul, B. Schwikowski, B. Sen, M. T. Strauss, D. Turei, E. Ulusoy, D. Waltemath, J. A. H. Wodke, J. Saez-Rodriguez° Democratizing knowledge representation with BioCypher
Nature Biotechnology (2023).

(39) S. C. M. Reinhardt*, L. Masullo*, I. Baudrexel*, P. R. Steen*, R. Kowaleswki, A. E. Eklund, S. Strauss, E. M. Unterauer, T. Schlichthaerle, M. T. Strauss, C. Klein, R. Jungmann°
Ångström-resolution fluorescence microscopy
Nature (2023).

2022 (6)

(38) F. Torun, S. Virreira Winter, S. Doll, F. M. Riese, A. Vorobyev, J. B. Mueller-Reif, M. T. Strauss°, Transparent Exploration of Machine Learning for Biomarker Discovery from Proteomics and Omics Data. Journal of Proteome Research (2022).

(37) W. Zeng, X. Zhou, S. Willems, C. Ammar, M. Wahle, I. Bludau, E. Voytik, M. T. Strauss, M. Mann°, AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics. Nature Communications (2022).

(36) M. T. Strauss°, Picasso-server: a community-based, open-source processing framework for super-resolution data. Communications Biology (2022).

(35) L. Niu, M. Thiele, P. E. Geyer, D. N. Rasmussen, H. E. Webel, A. Santos, R. Gupta, F. Meier, M. T. Strauss, M. Kjaergaard, K. Lindvig, S. Jacobsen, S. Rasmussen, T. Hansen, A. Krag, M. Mann°, Noninvasive proteomic biomarkers for alcohol-related liver disease. Nature Medicine (2022).

(34) I. Bludau, S. Willems, W. Zeng, M. T. Strauss, F. M. Hansen, M. C. Tanzer, O. Karayel, B. A. Schulman, M. Mann°,
The structural context of posttranslational modifications at a proteome-wide scale
PLoS Biol (2022). 20(5): e3001636.

(33) A. Santos°, A. R. Colaço, A. B. Nielsen, L. Niu, M. T. Strauss, P. E. Geyer, N. J. Wewer Albrechtsen, F. Mundt, L. J. Jensen, M. Mann°,
A knowledge graph to interpret clinical proteomics data
Nature Biotechnology (2022).

2021 (7)

(32) E. Voytik, I. Bludau, S. Willems, F. M. Hansen, A. Brunner, M. T. Strauss, M. Mann°,
AlphaMap: an open-source python package for the visual annotation of proteomics data with sequence specific knowledge
Bioinformatics (2021).

(31) S. Willems, E. Voytik, P. Skowronek, M. T. Strauss, M. Mann°,
AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
MCP (2021).

(30) M. Mann°, C. Kumar°, W. Zeng°, M. T. Strauss°,
Artificial intelligence for proteomics and biomarker discovery
Cell Systems (2021). 12(8): 759-770

(29) P.E. Geyer*°, F.M. Arend, S. Doll, M.L. Louiset, S. Virreira Winter, J.B. Müller-Reif, F.M. Torun, M. Weigand, P. Eichhorn, M. Bruegel, M. T. Strauss, L.M. Holdt, M. Mann, D. Teupser°
High-resolution serum proteome trajectories in COVID-19 reveal patient-specific seroconversion
EMBO Mol Med (2021). e14167

(28) F. Meier*, N. D. Köhler*, A. Brunner*, J. H. Wanka, E. Voytik, M. T. Strauss, F. J. Theis°, M. Mann°
Deep learning the collisional cross sections of the peptide universe from a million experimental values
Nature Communications (2021). 12: 1185

(27) L.S. Fischer*, C. Klingner*, T. Schlichthaerle*, M.T. Strauss, R. Böttcher, R. Fässler°, R. Jungmann°, C. Grashoff°
Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion
Nature Communications (2021). 12: 919

(26) S.V. Winter*, O. Karayel*, M.T. Strauss, S. Padmanabhan, M Surface, K. Merchant, R. N. Alcalay, M. Mann°
Urinary proteome profiling for stratifying patients with familial Parkinson’s disease
EMBO Mol Med (2021). e13257

2020 (4)

(25) S.F.J. Wickham, A. Auer, J. Min, N. Ponnuswamy, J.B. Woehrstein, F. Schueder, M.T. Strauss, J. Schnitzbauer, B. Nathwani, Z. Zhao, S.D. Perrault, J. Hahn, S. Lee, M.M. Bastings, S.W. Helmig, A.L Kodal, P. Yin, R. Jungmann°, W.M. Shih°
Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
Nature Communications (2020). 11: 5768

(24) J.B. Mueller*, P.E. Geyer*, A.R. Colaço, P.V. Treit, M.T. Strauss, M. Oroshi, S. Doll, S.V. Winter, J.B. Bader, N. Koehler, F. Theis, A. Santos, M. Mann
The proteome landscape of the kingdoms of life
Nature (2020). 582, 592–596

(23) J.M. Bader*, P.E. Geyer*, J.B. Muller, M.T. Strauss, M. Koch, F. Leypoldt, P. Koertvelyessy, D. Bittner, C.G. Schipke, E.I. Incesoy, O. Peters, N. Deigendesch, M. Simons, M.K. Jensen, H. Zetterberg, M. Mann
Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer’s disease
Molecular Systems Biology (2020). 16: e9356

(22) A. Auer, M.T. Strauss, S. Strauss, R. Jungmann
nanoTRON: a Picasso module for MLP-based classification of super-resolution data
Bioinformatics (2020). 20(09): 6732-6737

2019 (5)

(21) F. Schueder, J. Stein, F. Stehr, A. Auer, B. Sperl, M.T. Strauss, P. Schwille, R. Jungmann
An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions
Nature Methods (2019). 16: 1101–1104

(20) C. Böger, A. Hafner, T. Schlichthaerle, M.T. Strauss, S. Malkusch, U. Endesfelder, R. Jungmann, E.M. Schuman°, M. Heilemann°
Super-resolution imaging and estimation of protein copy numbers at single synapses with DNA-point accumulation for imaging in nanoscale topography
Neurophotonics (2019). 6(3): 035008

(19) T. Schlichthaerle*, M.T. Strauss*, F. Schueder*, A. Auer, B. Nijmeijer, M. Kueblbeck, V.J. Sabinina, J.V. Thevathasan, J. Ries, J. Ellenberg, R. Jungmann
Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT
Angewandte Chemie Int. Ed. (2019). 58: 13004-13008

(18) O.K. Wade*, J.B. Woehrstein*, P.C. Nickels*, S. Strauss*, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann
124-color super-resolution imaging by engineering DNA-PAINT blinking kinetics
Nano Letters (2019). 19(4): 2641-2646

(17) S. Kempter, A. Khmelinskaia, M.T. Strauss, P. Schwille, R. Jungmann, T. Liedl, W. Bae
Single Particle Tracking and Super-Resolution Imaging of Membrane-Assisted Stop-and-Go Diffusion and Lattice Assembly of DNA Origami
ACS Nano (2019). 13(2): 996–1002

2018 (8)

(16) H. Heydarian, F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, B. Rieger
Template-free 2D particle fusion in localization microscopy
Nature Methods (2018). 15: 781–784

(15) A. Auer, T. Schlichthaerle, J.B. Woehrstein, F. Schueder, M.T. Strauss, H. Grabmayr, R. Jungmann
Nanometer-scale multiplexed super-resolution imaging with an economic 3D-DNA-PAINT microscope
ChemPhysChem (2018). 19(22): 3024–3034

(14) S. Strauss, P.C. Nickels, M.T. Strauss, V.J. Sabinina, J. Ellenberg, J.D. Carter, S. Gupta, N. Janjic, R. Jungmann
Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging
Nature Methods (2018). 15: 685–688

(13) T. Schlichthaerle, A.S. Eklund, F. Schueder, M.T. Strauss, C. Tiede, A. Curd, J. Ries, M. Peckham, D.C. Tomlinson, R. Jungmann
Site-specific labeling of Affimers for DNA-PAINT microscopy
Angewandte Chemie Int. Ed. (2018). 57: 11060-11063

(12) N.S. Deußner-Helfmann, A. Auer, M.T. Strauss, S. Malkusch, M.S. Dietz, H. Barth, R. Jungmann°, M. Heilemann°
Correlative Single-Molecule FRET and DNA-PAINT Imaging
Nano Letters (2018). 18(7): 4626-4630

(11) M.T. Strauss*, F. Schueder*, D. Haas*, P.C. Nickels, R. Jungmann
Quantifying absolute addressability in DNA origami with molecular resolution
Nature Communications (2018). 9: 1600

(10) J. Mücksch*, P. Blumhardt*, M.T. Strauss, E.P. Petrov, R. Jungmann, P. Schwille
Quantifying reversible surface binding via surface-integrated FCS
Nano Letters (2018). 18(5): 3185–3192

(9) S. Baenfer, D. Schneider, J. Dewes, M.T. Strauss, S. Freibert, T. Heimerl, U.G. Maier, H. Elsaesser, R. Jungmann, R. Jacob
A molecular mechanism to recruit galectin-3 into multivesicular bodies for polarized exosomal secretion
PNAS (2018). 115(19): E4396-E4405

2017 (6)

(8) F. Schueder, J. Lara-Guitérrez, B.J. Beliveau, S.K. Saka, H.M. Sasaki, J.B. Woehrstein, M.T. Strauss, H. Grabmayr, P. Yin°, R. Jungmann°
Multiplexed 3D super-resolution imaging of whole cells using Spinning Disk Confocal Microscopy and DNA-PAINT
Nature Communications (2017). 8: 2090

(7) A. Auer, M.T. Strauss, T. Schlichthaerle, R. Jungmann
Fast, background-free DNA-PAINT imaging using FRET-based probes
Nano Letters (2017). 17(10): 6428-6434

(6) L.L. Ong, N. Hanikel, O.K. Yaghi, C. Grun, M.T. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J.Y. Kishi, C.A. Myhrvold, A. Zhu, R. Jungmann, G. Bellot°, Y. Ke°, P. Yin°
Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components
Nature (2017). 552: 72-77

(5) J.B. Woehrstein*, M.T. Strauss*, L.L. Ong, B. Wei, D.Y. Zhang, R. Jungmann°, P. Yin°
Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA
Science Advances (2017). 3: e1602128

(4) J. Schnitzbauer*, M.T. Strauss*, T. Schlichthaerle, F. Schueder, R. Jungmann
Super-Resolution Microscopy with DNA-PAINT
Nature Protocols (2017). 12: 1198-1228

(3) F. Schueder, M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann
Universal Super-Resolution Multiplexing by DNA Exchange
Angewandte Chemie Int. Ed. (2017). 56: 4052-4055

2016 (1)

(2) T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, R. Jungmann
DNA nanotechnology and fluorescence applications
Current Opinion in Biotechnology (2016). 39: 41-47

2015 (1)

(1) J.B. Knudsen. L. Liu, A.L.B. Kodal, M. Madsen, Q. Li, J. Song, J.B. Woehrstein, S.F.J. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W.M. Shih. R. Jungmann, M. Dong°, K.V. Gothelf°
Routing of individual polymers in designed patterns
Nature Nanotechnology (2015). 11: 892-898